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  5. Sobic.001G039600.1

Sobic.001G039600.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0002605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002605_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G039600.1
Cluster HCAA Clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Kfl00882_0030 kfl00882_0030_v1.1 (at3g19895 : 176.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
Mp3g02140.1 No alias U-box domain-containing protein 62 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.9G038500.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
BP GO:0018142 protein-DNA covalent cross-linking IEP Predicted GO
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
CC GO:0044599 AP-5 adaptor complex IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!