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  5. Sobic.001G365900.1

Sobic.001G365900.1


Description : HUA2-type transcription factor


Gene families : OG_42_0001430 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G365900.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Bradi1g61937 No alias Tudor/PWWP/MBT domain-containing protein 0.02 Orthogroups_2024-Update
Bradi3g12902 No alias Tudor/PWWP/MBT domain-containing protein 0.04 Orthogroups_2024-Update
GRMZM2G021483 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.11G100400 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
MA_3338g0010 No alias (at5g23150 : 182.0) Putative transcription factor.... 0.02 Orthogroups_2024-Update
Mp8g15320.1 No alias transcription factor (HUA2) 0.03 Orthogroups_2024-Update
PSME_00015772-RA No alias (at5g23150 : 301.0) Putative transcription factor.... 0.02 Orthogroups_2024-Update
Seita.2G414600.1 No alias HUA2-type transcription factor 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000313 PWWP_dom 26 108
IPR006569 CID_dom 875 997
No external refs found!