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  5. Sobic.001G400500.1

Sobic.001G400500.1


Description : C2-class (Phytocalpain) calcium-activated protease


Gene families : OG_42_0004065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G400500.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At1g55350 No alias Calpain-type cysteine protease family... 0.03 Orthogroups_2024-Update
Bradi3g53020 No alias calpain-type cysteine protease family 0.04 Orthogroups_2024-Update
Glyma.08G125500 No alias calpain-type cysteine protease family 0.05 Orthogroups_2024-Update
HORVU6Hr1G069450.1 No alias C2-class (Phytocalpain) calcium-activated protease 0.06 Orthogroups_2024-Update
Kfl00386_0020 kfl00386_0020_v1.1 (at1g55350 : 583.0) Similar to maize DEK1, a gene... 0.03 Orthogroups_2024-Update
MA_129368g0010 No alias (at1g55350 : 1456.0) Similar to maize DEK1, a gene... 0.03 Orthogroups_2024-Update
Sopen12g035030 No alias Calpain family cysteine protease 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEA 16Dec
BP GO:0006508 proteolysis IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001300 Peptidase_C2_calpain_cat 1705 2004
IPR022682 Calpain_domain_III 2014 2150
No external refs found!