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  5. Sobic.001G416800.1

Sobic.001G416800.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G416800.1
Cluster HCAA Clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
170948 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
A4A49_29055 No alias putative histone h2a.4 0.04 Orthogroups_2024-Update
A4A49_30810 No alias histone h2ax 0.03 Orthogroups_2024-Update
At1g08880 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178W8H7] 0.03 Orthogroups_2024-Update
At3g20670 No alias Probable histone H2A.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHQ5] 0.03 Orthogroups_2024-Update
At4g27230 No alias Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826] 0.03 Orthogroups_2024-Update
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.04 Orthogroups_2024-Update
Bradi1g25390 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Brara.A02813.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Brara.B01060.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.C01065.1 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
Brara.E02150.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Cre06.g264950 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.07 Orthogroups_2024-Update
Cre06.g266700 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.06 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Cre12.g505550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g506250 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.09 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.05 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G109448 No alias histone H2A 12 0.03 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.03G148100 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.04 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Glyma.13G286000 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.05 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.07 Orthogroups_2024-Update
Glyma.19G151400 No alias gamma histone variant H2AX 0.05 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.05 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.05 Orthogroups_2024-Update
Kfl00125_0190 kfl00125_0190_v1.1 (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
MA_191819g0010 No alias (at4g27230 : 166.0) Encodes HTA2, a histone H2A... 0.03 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.03 Orthogroups_2024-Update
MA_962778g0010 No alias (q2hu68|h2a1_medtr : 184.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.03 Orthogroups_2024-Update
PSME_00008212-RA No alias (p50567|h2a_chlre : 107.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
PSME_00008214-RA No alias (q75l11|h2a6_orysa : 120.0) Probable histone H2A.6 -... 0.03 Orthogroups_2024-Update
PSME_00015855-RA No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
PSME_00015856-RA No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.03 Orthogroups_2024-Update
Potri.005G040700 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
Pp1s55_112V6 No alias histone 2 0.03 Orthogroups_2024-Update
Pp1s72_86V6 No alias histone h2a 0.03 Orthogroups_2024-Update
Seita.2G287100.1 No alias histone *(H2A) 0.12 Orthogroups_2024-Update
Seita.3G063000.1 No alias histone *(H2A) 0.09 Orthogroups_2024-Update
Seita.5G370600.1 No alias histone *(H2A) 0.12 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Seita.9G450000.1 No alias histone *(H2A) 0.12 Orthogroups_2024-Update
Sobic.001G416900.1 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.05 Orthogroups_2024-Update
Solyc09g010400 No alias Histone H2A (AHRD V3.3 *** K4CR67_SOLLC) 0.02 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.05 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.06 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.03 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.05 Orthogroups_2024-Update
Solyc11g073260 No alias Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) 0.04 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.05 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen12g001250 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 105 138
IPR007125 Histone_H2A/H2B/H3 17 102
No external refs found!