Sobic.001G422900.1


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0001974 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001974_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G422900.1
Cluster HCAA Clusters: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G045084 No alias RING-H2 finger C2A 0.03 Orthogroups_2024-Update
GRMZM2G364612 No alias zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
GRMZM2G567897 No alias zinc finger (C3HC4-type RING finger) family protein 0.05 Orthogroups_2024-Update
Glyma.07G134600 No alias RING-H2 finger C2A 0.03 Orthogroups_2024-Update
Glyma.15G036100 No alias zinc finger (C3HC4-type RING finger) family protein 0.03 Orthogroups_2024-Update
Glyma.18G037000 No alias RING-H2 finger C2A 0.03 Orthogroups_2024-Update
HORVU1Hr1G004330.4 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 Orthogroups_2024-Update
HORVU7Hr1G055010.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os01g74040 No alias zinc finger, RING-type, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g16480 No alias zinc finger family protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g01940 No alias zinc finger, RING-type, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G243300 No alias zinc finger (C3HC4-type RING finger) family protein 0.05 Orthogroups_2024-Update
Potri.006G087800 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
Potri.009G034800 No alias zinc finger (C3HC4-type RING finger) family protein 0.04 Orthogroups_2024-Update
Sobic.009G010400.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA 16Dec
Type GO Term Name Evidence Source
BP GO:0000731 DNA synthesis involved in DNA repair IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
CC GO:0005664 nuclear origin of replication recognition complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071897 DNA biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 134 176
IPR039525 RNF126-like_zinc-ribbon 7 36
IPR010543 DUF1117 192 273
No external refs found!