Sobic.002G246700.1

Description : component *(eIF3c) of eIF3 mRNA-to-PIC binding complex

Gene families : OG_42_0002950 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002950_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.002G246700.1
Cluster	HCAA Clusters: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
At3g56150	No alias	Eukaryotic translation initiation factor 3 subunit C...	0.03	Orthogroups_2024-Update
Cre04.g217550	No alias	eukaryotic translation initiation factor 3C	0.02	Orthogroups_2024-Update
Glyma.05G245100	No alias	eukaryotic translation initiation factor 3C	0.02	Orthogroups_2024-Update
LOC_Os07g03230	No alias	eukaryotic translation initiation factor 3 subunit C,...	0.02	Orthogroups_2024-Update
Seita.2G253000.1	No alias	component *(eIF3c) of eIF3 mRNA-to-PIC binding complex	0.05	Orthogroups_2024-Update
Sopen01g044990	No alias	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	0.02	Orthogroups_2024-Update
Sopen01g045010	No alias	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEA	16Dec
BP	GO:0006413	translational initiation	IEA	16Dec
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0031369	translation initiation factor binding	IEA	16Dec
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006534	cysteine metabolic process	IEP	Predicted GO
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009092	homoserine metabolic process	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
BP	GO:0019346	transsulfuration	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0050667	homocysteine metabolic process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR008905	EIF3C_N_dom	49	658
IPR000717	PCI_dom	666	794

External Links

No external refs found!