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  5. Sobic.003G059750.1

Sobic.003G059750.1


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0003953 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G059750.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
A4A49_18475 No alias dynein assembly factor with wdr repeat domains 1 0.03 Orthogroups_2024-Update
AC218457.2_FG013 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.04 Orthogroups_2024-Update
Bradi5g22017 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.11 Orthogroups_2024-Update
Cre02.g078150 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.02 Orthogroups_2024-Update
Glyma.09G037300 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.02 Orthogroups_2024-Update
Glyma.10G013500 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.03 Orthogroups_2024-Update
Glyma.15G142600 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.04 Orthogroups_2024-Update
HORVU5Hr1G002030.2 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
PSME_00015837-RA No alias (at2g47410 : 971.0) WD40/YVTN repeat-like-containing... 0.04 Orthogroups_2024-Update
Seita.9G430500.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001487 Bromodomain 1620 1669
IPR001680 WD40_repeat 232 268
IPR001680 WD40_repeat 317 356
IPR001680 WD40_repeat 393 421
IPR001680 WD40_repeat 275 310
IPR001680 WD40_repeat 575 614
No external refs found!