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  5. Sobic.003G108700.3

Sobic.003G108700.3


Description : component *(CWC21) of MAC spliceosome-associated complex


Gene families : OG_42_0005890 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005890_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G108700.3
Cluster HCAA Clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
A4A49_34404 No alias hypothetical protein 0.04 Orthogroups_2024-Update
At3g23900 No alias RNA recognition motif (RRM)-containing protein... 0.02 Orthogroups_2024-Update
Glyma.05G152900 No alias RNA recognition motif (RRM)-containing protein 0.04 Orthogroups_2024-Update
Glyma.08G109600 No alias RNA recognition motif (RRM)-containing protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G014950.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G014980.1 No alias Unknown function 0.04 Orthogroups_2024-Update
PSME_00012026-RA No alias (at3g23900 : 251.0) RNA recognition motif... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 346 406
IPR017868 Filamin/ABP280_repeat-like 75 173
No external refs found!