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  5. Sobic.003G427600.1

Sobic.003G427600.1


Description : villin actin-crosslinking factor


Gene families : OG_42_0000618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G427600.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
At5g57320 No alias Villin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVC6] 0.03 Orthogroups_2024-Update
Glyma.02G184600 No alias villin 2 0.02 Orthogroups_2024-Update
LOC_Os03g24220 No alias villin protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00009538-RA No alias (at2g41740 : 416.0) Encodes a protein with high homology... 0.02 Orthogroups_2024-Update
Solyc10g080100 No alias villin 2 (AHRD V3.3 *** AT2G41740.2) 0.03 Orthogroups_2024-Update
Sopen02g005870 No alias Gelsolin repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA 16Dec
BP GO:0007010 cytoskeleton organization IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
InterPro domains Description Start Stop
IPR003128 Villin_headpiece 948 983
IPR007123 Gelsolin-like_dom 410 485
IPR007123 Gelsolin-like_dom 148 219
IPR007123 Gelsolin-like_dom 28 110
IPR007123 Gelsolin-like_dom 536 603
IPR007123 Gelsolin-like_dom 270 336
IPR007123 Gelsolin-like_dom 645 716
No external refs found!