At3g55280

Description : 60S ribosomal protein L23a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3C3]

Gene families : OG_42_0001552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001552_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At3g55280
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
271663	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
A4A49_21337	No alias	60s ribosomal protein l23a	0.04	Orthogroups_2024-Update
A4A49_58225	No alias	60s ribosomal protein l23a	0.06	Orthogroups_2024-Update
A4A49_63547	No alias	60s ribosomal protein l23a	0.04	Orthogroups_2024-Update
A4A49_64626	No alias	60s ribosomal protein l23a	0.05	Orthogroups_2024-Update
Bradi1g06220	No alias	ribosomal protein L23AB	0.05	Orthogroups_2024-Update
Bradi5g14750	No alias	ribosomal protein L23AB	0.05	Orthogroups_2024-Update
Brara.C02018.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.D02393.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.E00623.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.I03781.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre06.g282500	No alias	ribosomal protein L23AA	0.1	Orthogroups_2024-Update
GRMZM2G060054	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
GRMZM2G083253	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
Glyma.12G066700	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
Glyma.13G332700	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
Glyma.18G286400	No alias	ribosomal protein L23AB	0.05	Orthogroups_2024-Update
HORVU2Hr1G086360.3	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU2Hr1G086390.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Mp2g00570.1	No alias	component RPL23a of LSU proteome component	0.02	Orthogroups_2024-Update
Potri.008G050200	No alias	ribosomal protein L23AB	0.09	Orthogroups_2024-Update
Potri.009G027000	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
Potri.016G079800	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Pp1s146_96V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.04	Orthogroups_2024-Update
Pp1s459_11V6	No alias	60s ribosomal protein	0.02	Orthogroups_2024-Update
Pp1s46_72V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.08	Orthogroups_2024-Update
Pp1s47_274V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.08	Orthogroups_2024-Update
Seita.1G230300.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Seita.7G156000.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.006G137100.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.010G060500.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Solyc02g092080	No alias	60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)	0.06	Orthogroups_2024-Update
Solyc09g005720	No alias	60S ribosomal protein L23A (AHRD V3.3 *** A0A0B2RCV3_GLYSO)	0.03	Orthogroups_2024-Update
Solyc10g084610	No alias	60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)	0.06	Orthogroups_2024-Update
Solyc10g086330	No alias	60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)	0.08	Orthogroups_2024-Update
Sopen09g001610	No alias	Ribosomal protein L23, N-terminal domain	0.09	Orthogroups_2024-Update
Sopen10g035710	No alias	Ribosomal protein L23, N-terminal domain	0.06	Orthogroups_2024-Update
evm.model.contig_3754.2	No alias	(q07761\|rl23a_tobac : 174.0) 60S ribosomal protein L23a...	0.09	Orthogroups_2024-Update
evm.model.tig00000037.39	No alias	(q07761\|rl23a_tobac : 188.0) 60S ribosomal protein L23a...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
CC	GO:0000178	exosome (RNase complex)	IEP	Predicted GO
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006275	regulation of DNA replication	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016851	magnesium chelatase activity	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Predicted GO
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
CC	GO:1905354	exoribonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005633	Ribosomal_L23/L25_N	15	63
IPR013025	Ribosomal_L25/23	74	136

External Links

No external refs found!

At3g55280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation