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  5. Sobic.005G034700.1

Sobic.005G034700.1


Description : component *(DDP) of ISWI chromatin remodeling complex & PHD finger transcription factor


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G034700.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
441144 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
At5g12400 No alias PHD-finger and DNA binding domain-containing protein... 0.03 Orthogroups_2024-Update
Bradi4g42780 No alias PHD finger family protein 0.03 Orthogroups_2024-Update
GRMZM2G128176 No alias DNA binding;zinc ion binding;DNA binding 0.05 Orthogroups_2024-Update
Glyma.11G095800 No alias DNA binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Glyma.12G180700 No alias PHD finger family protein 0.03 Orthogroups_2024-Update
Glyma.13G320100 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
LOC_Os11g05130 No alias PHD-finger family protein, expressed 0.03 Orthogroups_2024-Update
MA_10689g0010 No alias (at5g35210 : 257.0) metalloendopeptidases;zinc ion... 0.03 Orthogroups_2024-Update
Seita.2G420800.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018501 DDT_dom 463 516
IPR019787 Znf_PHD-finger 677 719
No external refs found!