Sobic.007G000100.1


Description : HUA2-type transcription factor


Gene families : OG_42_0001430 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001430_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G000100.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
A4A49_11606 No alias enhancer of ag-4 protein 2 0.03 Orthogroups_2024-Update
At3g63070 No alias Protein HUA2-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:F4IZM8] 0.02 Orthogroups_2024-Update
Bradi1g19370 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
Bradi1g61937 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
Bradi3g12902 No alias Tudor/PWWP/MBT domain-containing protein 0.08 Orthogroups_2024-Update
GRMZM2G021483 No alias Tudor/PWWP/MBT domain-containing protein 0.05 Orthogroups_2024-Update
GRMZM2G075628 No alias Tudor/PWWP/MBT domain-containing protein 0.05 Orthogroups_2024-Update
Glyma.02G149200 No alias Tudor/PWWP/MBT domain-containing protein 0.07 Orthogroups_2024-Update
Glyma.10G024500 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.12G026600 No alias Tudor/PWWP/MBT domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.19G153900 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G002690.2 No alias HUA2-type transcription factor 0.05 Orthogroups_2024-Update
HORVU4Hr1G036120.27 No alias HUA2-type transcription factor 0.04 Orthogroups_2024-Update
Kfl00285_0010 kfl00285_0010_v1.1 (at5g23150 : 115.0) Putative transcription factor.... 0.03 Orthogroups_2024-Update
MA_3338g0010 No alias (at5g23150 : 182.0) Putative transcription factor.... 0.05 Orthogroups_2024-Update
Mp8g15320.1 No alias transcription factor (HUA2) 0.05 Orthogroups_2024-Update
PSME_00015772-RA No alias (at5g23150 : 301.0) Putative transcription factor.... 0.05 Orthogroups_2024-Update
Potri.014G138700 No alias Tudor/PWWP/MBT domain-containing protein 0.03 Orthogroups_2024-Update
Seita.2G414600.1 No alias HUA2-type transcription factor 0.07 Orthogroups_2024-Update
Seita.6G001200.1 No alias HUA2-type transcription factor 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000313 PWWP_dom 22 111
IPR006569 CID_dom 821 946
No external refs found!