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  5. Sobic.007G044100.1

Sobic.007G044100.1


Description : component *(NRPB1) of RNA polymerase II complex


Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G044100.1
Cluster HCAA Clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
110201 No alias RNA polymerase II large subunit 0.03 Orthogroups_2024-Update
Brara.H01626.1 No alias component *(NRPB1) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
Glyma.01G162200 No alias RNA polymerase II large subunit 0.04 Orthogroups_2024-Update
Glyma.11G081200 No alias RNA polymerase II large subunit 0.05 Orthogroups_2024-Update
HORVU5Hr1G114400.2 No alias component *(NRPB1) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
Kfl00243_0080 kfl00243_0080_v1.1 (at5g60040 : 1445.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update
Kfl00550_0020 kfl00550_0020_v1.1 (at4g35800 : 2125.0) Encodes the unique largest subunit... 0.02 Orthogroups_2024-Update
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.04 Orthogroups_2024-Update
PSME_00000873-RA No alias (at4g35800 : 2661.0) Encodes the unique largest subunit... 0.03 Orthogroups_2024-Update
Pp1s460_26V6 No alias rna polymerase ii large subunit 0.03 Orthogroups_2024-Update
Seita.6G058200.1 No alias component *(NRPB1) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
evm.model.tig00000241.15 No alias (at4g35800 : 1627.0) Encodes the unique largest subunit... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA 16Dec
BP GO:0006351 transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 351 519
IPR007066 RNA_pol_Rpb1_3 523 686
IPR007080 RNA_pol_Rpb1_1 14 349
IPR007081 RNA_pol_Rpb1_5 824 1414
IPR007083 RNA_pol_Rpb1_4 714 817
IPR007075 RNA_pol_Rpb1_6 890 1074
IPR007073 RNA_pol_Rpb1_7 1159 1293
No external refs found!