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  5. Sobic.007G116200.1

Sobic.007G116200.1


Description : pre-mRNA-processing protein *(PRP39)


Gene families : OG_42_0002928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G116200.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
At1g04080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.03 Orthogroups_2024-Update
At5g46400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.02 Orthogroups_2024-Update
Bradi3g35037 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 Orthogroups_2024-Update
MA_6626g0010 No alias (at1g04080 : 605.0) PRP39; INVOLVED IN: regulation of... 0.04 Orthogroups_2024-Update
Pp1s30_190V6 No alias F21M11.23; hydroxyproline-rich glycoprotein family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!