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  5. Sobic.008G101800.1

Sobic.008G101800.1


Description : Unknown function


Gene families : OG_42_0002120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G101800.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Bradi4g07000 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.I03691.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.02G220400 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Pp1s34_176V6 No alias af428345_1 at3g54190 f24b22_150 0.03 Orthogroups_2024-Update
Seita.3G201200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G359700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen03g025260 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen06g014630 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!