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  5. Sobic.009G165700.1

Sobic.009G165700.1


Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex


Gene families : OG_42_0004561 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004561_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G165700.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
At2g39340 No alias SAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8] 0.02 Orthogroups_2024-Update
Bradi2g23017 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.05 Orthogroups_2024-Update
Bradi2g54290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.07 Orthogroups_2024-Update
Glyma.10G292300 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.04 Orthogroups_2024-Update
Glyma.20G242100 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.04 Orthogroups_2024-Update
MA_39508g0010 No alias (at2g39340 : 426.0) SAC3/GANP/Nin1/mts3/eIF-3 p25... 0.05 Orthogroups_2024-Update
PSME_00011860-RA No alias (at2g39340 : 403.0) SAC3/GANP/Nin1/mts3/eIF-3 p25... 0.03 Orthogroups_2024-Update
Seita.3G214500.1 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 707 911
No external refs found!