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  5. Sobic.010G201500.4

Sobic.010G201500.4


Description : component *(SOP1) of PAXT RNA-exosome-activation complex


Gene families : OG_42_0005874 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005874_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.010G201500.4
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi1g30260 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.1 Orthogroups_2024-Update
GRMZM2G012041 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.08 Orthogroups_2024-Update
GRMZM5G889418 No alias Function unknown 0.03 Orthogroups_2024-Update
HORVU7Hr1G116690.1 No alias component *(SOP1) of PAXT RNA-exosome-activation complex 0.04 Orthogroups_2024-Update
Kfl00265_0040 kfl00265_0040_v1.1 (at1g21580 : 235.0) Zinc finger C-x8-C-x5-C-x3-H type... 0.03 Orthogroups_2024-Update
MA_140138g0020 No alias (at1g21580 : 407.0) Zinc finger C-x8-C-x5-C-x3-H type... 0.03 Orthogroups_2024-Update
Potri.002G077700 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Potri.005G182900 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
Pp1s30_193V6 No alias zinc finger ccch-type containing 3 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!