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  5. Seita.1G086600.1

Seita.1G086600.1


Description : PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone methylation complex


Gene families : OG_42_0001253 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G086600.1
Cluster HCAA Clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
At4g30200 No alias VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4] 0.03 Orthogroups_2024-Update
Brara.F02486.1 No alias PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 Orthogroups_2024-Update
Glyma.09G188000 No alias Fibronectin type III domain-containing protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G096840.1 No alias PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 Orthogroups_2024-Update
LOC_Os12g34850 No alias Fibronectin type III domain containing protein, expressed 0.04 Orthogroups_2024-Update
PSME_00044254-RA No alias (at4g30200 : 385.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0071203 WASH complex IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 144 261
No external refs found!