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  5. Seita.1G185600.1

Seita.1G185600.1


Description : exoribonuclease *(RNase J)


Gene families : OG_42_0003719 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003719_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.1G185600.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45230 No alias RNA-metabolising metallo-beta-lactamase family protein 0.08 Orthogroups_2024-Update
Glyma.04G194600 No alias RNA-metabolising metallo-beta-lactamase family protein 0.04 Orthogroups_2024-Update
Glyma.06G171400 No alias RNA-metabolising metallo-beta-lactamase family protein 0.04 Orthogroups_2024-Update
Glyma.17G128500 No alias RNA-metabolising metallo-beta-lactamase family protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G015830.1 No alias exoribonuclease *(RNase J) 0.03 Orthogroups_2024-Update
Kfl00045_0380 kfl00045_0380_v1.1 (at5g63420 : 749.0) embryo defective 2746 (emb2746);... 0.02 Orthogroups_2024-Update
PSME_00022910-RA No alias (at5g63420 : 459.0) embryo defective 2746 (emb2746);... 0.02 Orthogroups_2024-Update
Sobic.004G070200.1 No alias exoribonuclease *(RNase J) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
MF GO:0050525 cutinase activity IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011108 RMMBL 440 485
IPR001279 Metallo-B-lactamas 114 250
No external refs found!