Description : nucleoporin of nuclear pore complex *(NUA)
Gene families : OG_42_0003732 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003732_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica: Seita.1G316200.1 | |
Cluster | HCAA Clusters: Cluster_144 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
444132 | No alias | nuclear pore anchor | 0.03 | Orthogroups_2024-Update | |
Bradi3g59627 | No alias | nuclear pore anchor | 0.09 | Orthogroups_2024-Update | |
Glyma.08G162300 | No alias | nuclear pore anchor | 0.07 | Orthogroups_2024-Update | |
Glyma.15G265300 | No alias | nuclear pore anchor | 0.06 | Orthogroups_2024-Update | |
Kfl00065_0380 | kfl00065_0380_v1.1 | (at1g79280 : 375.0) Encodes a 237-kDA protein with... | 0.02 | Orthogroups_2024-Update | |
Mp2g14600.1 | No alias | NUA nucleoporin of nuclear pore complex | 0.02 | Orthogroups_2024-Update | |
Sobic.004G242400.1 | No alias | nucleoporin of nuclear pore complex *(NUA) | 0.06 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006606 | protein import into nucleus | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003677 | DNA binding | IEP | Predicted GO |
MF | GO:0003712 | transcription coregulator activity | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
MF | GO:0004525 | ribonuclease III activity | IEP | Predicted GO |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
CC | GO:0016592 | mediator complex | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
CC | GO:0030117 | membrane coat | IEP | Predicted GO |
CC | GO:0030119 | AP-type membrane coat adaptor complex | IEP | Predicted GO |
CC | GO:0030131 | clathrin adaptor complex | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR012929 | TPR/MLP1 | 1045 | 1173 |
No external refs found! |