Seita.2G320900.1


Description : CHD3-type chromatin remodeling factor *(PKL/PKR)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G320900.1
Cluster HCAA Clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
177985 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.04 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.05 Orthogroups_2024-Update
At2g28290 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.1 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Cre03.g179300 No alias chromatin remodeling 5 0.01 Orthogroups_2024-Update
Cre12.g537671 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
GRMZM2G010085 No alias chromatin remodeling factor17 0.04 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.07 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.05 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.08 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.08 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Glyma.10G250500 No alias Homeotic gene regulator 0.1 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.05 Orthogroups_2024-Update
Glyma.14G033600 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Glyma.15G097000 No alias chromatin remodeling factor17 0.05 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU2Hr1G022450.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.03 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.09 Orthogroups_2024-Update
Kfl00010_0280 kfl00010_0280_v1.1 (at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
LOC_Os06g08480 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.04 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.05 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Orthogroups_2024-Update
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Orthogroups_2024-Update
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.03 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.04 Orthogroups_2024-Update
PSME_00006567-RA No alias (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... 0.07 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
Potri.001G123400 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Potri.001G253400 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Pp1s123_125V6 No alias snf2 super family 0.03 Orthogroups_2024-Update
Pp1s33_329V6 No alias chromatin remodeling complex subunit 0.03 Orthogroups_2024-Update
Pp1s360_39V6 No alias syd atpase chromatin binding 0.05 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.09 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.05 Orthogroups_2024-Update
Sobic.010G105200.1 No alias SMARCA component *(SYD/BRM/MINU) 0.05 Orthogroups_2024-Update
Solyc11g062010 No alias Chromatin structure-remodeling complex subunit snf21... 0.03 Orthogroups_2024-Update
Sopen01g029280 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update
Sopen02g017710 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.01 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 78 121
IPR001650 Helicase_C 982 1093
IPR000330 SNF2_N 681 956
IPR023780 Chromo_domain 575 624
IPR009463 DUF1087 1262 1311
No external refs found!