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  5. Seita.2G420800.1

Seita.2G420800.1


Description : component *(DDP) of ISWI chromatin remodeling complex & PHD finger transcription factor


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.2G420800.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Bradi1g18770 No alias DNA binding;zinc ion binding;DNA binding 0.09 Orthogroups_2024-Update
Bradi4g42780 No alias PHD finger family protein 0.07 Orthogroups_2024-Update
GRMZM2G128176 No alias DNA binding;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
Glyma.11G095800 No alias DNA binding;zinc ion binding;DNA binding 0.07 Orthogroups_2024-Update
Glyma.12G021900 No alias DNA binding;zinc ion binding;DNA binding 0.05 Orthogroups_2024-Update
Glyma.12G084300 No alias PHD finger family protein 0.05 Orthogroups_2024-Update
Glyma.13G320100 No alias metalloendopeptidases;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
HORVU5Hr1G041230.9 No alias PHD finger transcription factor & component *(DDP) of... 0.05 Orthogroups_2024-Update
MA_10689g0010 No alias (at5g35210 : 257.0) metalloendopeptidases;zinc ion... 0.05 Orthogroups_2024-Update
Mp4g03480.1 No alias PHD finger transcription factor 0.04 Orthogroups_2024-Update
PSME_00009679-RA No alias (at5g12400 : 514.0) DNA binding;zinc ion binding;DNA... 0.04 Orthogroups_2024-Update
Sobic.002G405800.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.04 Orthogroups_2024-Update
Sobic.005G034700.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 435 477
IPR018501 DDT_dom 244 296
No external refs found!