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  5. Seita.3G156100.1

Seita.3G156100.1


Description : Unknown function


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.3G156100.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.09 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Brara.A02935.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.17G054400 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.18G295000 No alias ortholog of maize chloroplast splicing factor CRS1 0.03 Orthogroups_2024-Update
Glyma.19G014000 No alias CRM family member 2 0.02 Orthogroups_2024-Update
Glyma.20G205000 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
HORVU1Hr1G083550.4 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00095_0160 kfl00095_0160_v1.1 (at3g18390 : 154.0) embryo defective 1865 (EMB1865);... 0.02 Orthogroups_2024-Update
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.03 Orthogroups_2024-Update
Potri.006G149000 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Potri.010G077100 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Sobic.006G110200.2 No alias plastidial RNA splicing factor *(CFM2) 0.04 Orthogroups_2024-Update
Sobic.009G223200.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.02 Orthogroups_2024-Update
Solyc07g039500 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.03 Orthogroups_2024-Update
Sopen02g031990 No alias CRS1 / YhbY (CRM) domain 0.02 Orthogroups_2024-Update
Sopen03g038300 No alias CRS1 / YhbY (CRM) domain 0.02 Orthogroups_2024-Update
Sopen07g019080 No alias CRS1 / YhbY (CRM) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 597 683
IPR001890 RNA-binding_CRM 184 266
IPR001890 RNA-binding_CRM 385 469
No external refs found!