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  5. Solyc03g110880

Solyc03g110880


Description : RNA polymerase 4 second largest subunit (RPD2)


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g110880
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
148107 No alias DNA-directed RNA polymerase family protein 0.03 Orthogroups_2024-Update
Bradi3g05847 No alias nuclear RNA polymerase C2 0.03 Orthogroups_2024-Update
Cre12.g542800 No alias nuclear RNA polymerase C2 0.01 Orthogroups_2024-Update
Glyma.06G061600 No alias nuclear RNA polymerase D2A 0.03 Orthogroups_2024-Update
Glyma.09G066000 No alias DNA-directed RNA polymerase family protein 0.03 Orthogroups_2024-Update
Kfl00026_0050 kfl00026_0050_v1.1 (at5g45140 : 1509.0) Encodes a subunit of RNA polymerase... 0.02 Orthogroups_2024-Update
Mp4g21160.1 No alias subunit 2 of Pol II RNA polymerase 0.02 Orthogroups_2024-Update
Potri.018G019100 No alias nuclear RNA polymerase D2A 0.02 Orthogroups_2024-Update
Pp1s84_245V6 No alias rna polymerase ii second largest subunit 0.02 Orthogroups_2024-Update
Seita.1G002700.1 No alias component *(NRPC2) of RNA polymerase III complex 0.03 Orthogroups_2024-Update
Seita.7G258200.1 No alias component *(NRPE2) of RNA polymerase V complex &... 0.03 Orthogroups_2024-Update
Sobic.010G080700.2 No alias component *(NRPC2) of RNA polymerase III complex 0.03 Orthogroups_2024-Update
Sopen03g030070 No alias RNA polymerase Rpb2, domain 6 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008193 tRNA guanylyltransferase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!