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  5. Seita.5G245900.1

Seita.5G245900.1


Description : RNA editing factor *(MEF1)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G245900.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
At1g08070 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Orthogroups_2024-Update
At4g31070 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.06 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Orthogroups_2024-Update
Brara.E00818.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.J02567.1 No alias RNA editing factor *(MEF37) 0.03 Orthogroups_2024-Update
GRMZM2G084176 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G161900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G033300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G141600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G172502 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G062300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
HORVU2Hr1G035300.1 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Potri.004G208000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g038010 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g002630 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 169 195
IPR002885 Pentatricopeptide_repeat 196 223
IPR002885 Pentatricopeptide_repeat 92 118
IPR002885 Pentatricopeptide_repeat 369 393
IPR002885 Pentatricopeptide_repeat 295 342
IPR032867 DYW_dom 509 601
No external refs found!