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  5. Seita.5G337300.1

Seita.5G337300.1


Description : endomembrane trafficking ATG6-stability regulator protein *(TRAF1)


Gene families : OG_42_0002099 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002099_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G337300.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
At5g43560 No alias TNF receptor-associated factor homolog 1a... 0.03 Orthogroups_2024-Update
Bradi2g51517 No alias TRAF-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi4g02725 No alias TRAF-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G145300 No alias TRAF-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G008700 No alias TRAF-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G188600 No alias TRAF-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G086700 No alias TRAF-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU1Hr1G078170.6 No alias endomembrane trafficking ATG6-stability regulator... 0.03 Orthogroups_2024-Update
HORVU5Hr1G016190.3 No alias endomembrane trafficking ATG6-stability regulator... 0.02 Orthogroups_2024-Update
LOC_Os01g56800 No alias MATH domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g43280 No alias MATH domain containing protein, expressed 0.04 Orthogroups_2024-Update
Pp1s349_6V6 No alias K9D7.6; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.008G153000.1 No alias endomembrane trafficking ATG6-stability regulator... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
CC GO:0071203 WASH complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 74 191
No external refs found!