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  5. Seita.6G218300.1

Seita.6G218300.1


Description : component *(NOT4) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G218300.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
A4A49_61093 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At3g45630 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.03 Orthogroups_2024-Update
Bradi4g45240 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.1 Orthogroups_2024-Update
GRMZM2G146267 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.11G150034 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
Glyma.12G073200 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Glyma.13G329600 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.15G044500 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Kfl00166_0220 kfl00166_0220_v1.... (at3g45630 : 268.0) RNA binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Potri.006G132300 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Solyc11g072590 No alias CCR4-NOT transcription complex subunit 4 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!