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  5. Seita.7G028700.1

Seita.7G028700.1


Description : E3 ubiquitin ligase *(UPL3)


Gene families : OG_42_0001466 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G028700.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
146155 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.05 Orthogroups_2024-Update
At4g38600 No alias E3 ubiquitin-protein ligase UPL3... 0.05 Orthogroups_2024-Update
Bradi2g22927 No alias ubiquitin-protein ligase 4 0.05 Orthogroups_2024-Update
Bradi3g00350 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.11 Orthogroups_2024-Update
Bradi5g04567 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.05 Orthogroups_2024-Update
Brara.B00068.1 No alias E3 ubiquitin ligase *(UPL3) 0.02 Orthogroups_2024-Update
Cre07.g312900 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.02 Orthogroups_2024-Update
GRMZM2G328988 No alias ubiquitin-protein ligase 4 0.04 Orthogroups_2024-Update
GRMZM2G374574 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.06 Orthogroups_2024-Update
Glyma.04G004000 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.04 Orthogroups_2024-Update
Glyma.06G003600 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update
Glyma.10G049100 No alias ubiquitin-protein ligase 4 0.05 Orthogroups_2024-Update
Glyma.11G107500 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.07 Orthogroups_2024-Update
Glyma.12G032500 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.06 Orthogroups_2024-Update
Glyma.13G136900 No alias ubiquitin-protein ligase 4 0.06 Orthogroups_2024-Update
HORVU2Hr1G011040.2 No alias E3 ubiquitin ligase *(UPL3) 0.03 Orthogroups_2024-Update
HORVU6Hr1G001760.2 No alias E3 ubiquitin ligase *(UPL3) 0.03 Orthogroups_2024-Update
MA_10428377g0020 No alias (at4g38600 : 758.0) encodes a member of HECT ubiquitin... 0.08 BP Orthogroups_2024-Update
MA_140610g0010 No alias (at4g38600 : 1157.0) encodes a member of HECT ubiquitin... 0.05 Orthogroups_2024-Update
MA_62286g0020 No alias (at4g38600 : 823.0) encodes a member of HECT ubiquitin... 0.05 Orthogroups_2024-Update
Mp1g24750.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.04 Orthogroups_2024-Update
PSME_00000237-RA No alias (at4g38600 : 1659.0) encodes a member of HECT ubiquitin... 0.04 Orthogroups_2024-Update
PSME_00002631-RA No alias (at4g38600 : 1949.0) encodes a member of HECT ubiquitin... 0.05 Orthogroups_2024-Update
PSME_00021195-RA No alias (at4g38600 : 1459.0) encodes a member of HECT ubiquitin... 0.08 Orthogroups_2024-Update
Potri.006G132000 No alias ubiquitin-protein ligase 4 0.03 Orthogroups_2024-Update
Potri.009G134300 No alias HEAT repeat ;HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update
Sobic.006G032300.1 No alias E3 ubiquitin ligase *(UPL3) 0.08 Orthogroups_2024-Update
Sobic.009G166300.1 No alias E3 ubiquitin ligase *(UPL3) 0.05 Orthogroups_2024-Update
Solyc01g111530 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** G7JNF2_MEDTR) 0.03 Orthogroups_2024-Update
Solyc10g055450 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** G7JNF2_MEDTR) 0.04 Orthogroups_2024-Update
Sopen01g053570 No alias HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update
Sopen10g025230 No alias HECT-domain (ubiquitin-transferase) 0.03 Orthogroups_2024-Update
evm.model.tig00020554.37 No alias (at4g38600 : 309.0) encodes a member of HECT ubiquitin... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0061666 UFM1 ligase activity IEP Predicted GO
MF GO:0071568 UFM1 transferase activity IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000569 HECT_dom 1490 1866
No external refs found!