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  5. Seita.9G002000.1

Seita.9G002000.1


Description : component *(LUG/LUH) of transcriptional co-repressor complex


Gene families : OG_42_0000674 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G002000.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Bradi1g00567 No alias LEUNIG_homolog 0.05 Orthogroups_2024-Update
Glyma.04G070200 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 Orthogroups_2024-Update
Glyma.17G205700 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.05 Orthogroups_2024-Update
HORVU3Hr1G053220.2 No alias component *(LUG/LUH) of transcriptional co-repressor complex 0.02 Orthogroups_2024-Update
HORVU3Hr1G053250.13 No alias component *(LUG/LUH) of transcriptional co-repressor complex 0.03 Orthogroups_2024-Update
Kfl01154_0010 kfl01154_0010_v1.1 (at4g32551 : 410.0) LEUNIG regulates floral organ... 0.03 Orthogroups_2024-Update
LOC_Os02g56880 No alias transcriptional corepressor LEUNIG, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g64300 No alias THION30 - Plant thionin family protein precursor, expressed 0.06 Orthogroups_2024-Update
Potri.001G049400 No alias LEUNIG_homolog 0.06 Orthogroups_2024-Update
Sobic.001G001900.1 No alias component *(LUG/LUH) of transcriptional co-repressor complex 0.07 Orthogroups_2024-Update
Solyc02g078000 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006594 LisH 10 33
IPR001680 WD40_repeat 442 469
IPR001680 WD40_repeat 691 722
IPR001680 WD40_repeat 480 511
IPR001680 WD40_repeat 519 555
IPR001680 WD40_repeat 609 639
No external refs found!