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  5. Seita.9G027200.1

Seita.9G027200.1


Description : group-II intron splicing RNA helicase *(RH3)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G027200.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
10677 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
99603 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
AC198418.3_FG005 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
Bradi1g03180 No alias DEAD box RNA helicase (RH3) 0.07 Orthogroups_2024-Update
Bradi4g02000 No alias putative mitochondrial RNA helicase 1 0.1 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.11 Orthogroups_2024-Update
Brara.I00503.1 No alias group-II intron splicing RNA helicase *(RH3) 0.03 Orthogroups_2024-Update
GRMZM2G565140 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
Glyma.02G281200 No alias putative mitochondrial RNA helicase 2 0.06 Orthogroups_2024-Update
Glyma.03G226600 No alias DEAD box RNA helicase (RH3) 0.04 Orthogroups_2024-Update
Glyma.14G033400 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
Glyma.19G223600 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
Glyma.20G152200 No alias DEAD box RNA helicase (PRH75) 0.03 Orthogroups_2024-Update
PSME_00018109-RA No alias (at5g26742 : 768.0) embryo defective 1138 (emb1138);... 0.03 Orthogroups_2024-Update
Potri.005G000100 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
Potri.005G000500 No alias DEAD box RNA helicase (RH3) 0.06 Orthogroups_2024-Update
Sobic.001G028100.1 No alias group-II intron splicing RNA helicase *(RH3) 0.06 Orthogroups_2024-Update
Solyc08g042050 No alias RNA helicase DEAD25 0.04 Orthogroups_2024-Update
Sopen07g023350 No alias DEAD/DEAH box helicase 0.05 Orthogroups_2024-Update
Sopen08g012480 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
Sopen12g002280 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
evm.model.contig_3385.6 No alias (at5g26742 : 365.0) embryo defective 1138 (emb1138);... 0.02 Orthogroups_2024-Update
evm.model.contig_468.12 No alias (at5g26742 : 306.0) embryo defective 1138 (emb1138);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0004386 helicase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0031179 peptide modification IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR012562 GUCT 523 623
IPR001650 Helicase_C 328 436
IPR001878 Znf_CCHC 742 758
IPR011545 DEAD/DEAH_box_helicase_dom 119 291
No external refs found!