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  5. Seita.9G430500.1

Seita.9G430500.1


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0003953 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003953_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G430500.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AC218457.2_FG013 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.03 Orthogroups_2024-Update
At2g47410 No alias WD40/YVTN repeat-like-containing domain;Bromodomain... 0.03 Orthogroups_2024-Update
Bradi5g22017 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.12 Orthogroups_2024-Update
Glyma.09G037300 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.06 Orthogroups_2024-Update
Glyma.15G142600 No alias WD40/YVTN repeat-like-containing domain;Bromodomain 0.05 Orthogroups_2024-Update
HORVU5Hr1G002030.2 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Kfl00516_0080 kfl00516_0080_v1.1 (at5g49430 : 657.0) WD40/YVTN repeat-like-containing... 0.02 Orthogroups_2024-Update
LOC_Os03g19340 No alias WD domain, G-beta repeat domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp2g00710.1 No alias Dynein assembly factor with WDR repeat domains 1... 0.02 Orthogroups_2024-Update
PSME_00015837-RA No alias (at2g47410 : 971.0) WD40/YVTN repeat-like-containing... 0.05 Orthogroups_2024-Update
Sobic.003G059750.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.08 Orthogroups_2024-Update
Sopen01g026220 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001487 Bromodomain 1616 1670
IPR001680 WD40_repeat 575 614
IPR001680 WD40_repeat 232 268
IPR001680 WD40_repeat 275 310
IPR001680 WD40_repeat 393 421
IPR001680 WD40_repeat 317 356
No external refs found!