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  5. Solyc04g064570

Solyc04g064570


Description : Ribosome maturation SBDS (AHRD V3.3 *** A0A0B0ME10_GOSAR)


Gene families : OG_42_0006492 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g064570
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Mp7g12140.1 No alias Sdo1 LSU processome maturation factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR018978 Ribosome_mat_SBDS_C 110 227
IPR019783 Ribosome_mat_SBDS_N 16 102
No external refs found!