1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g054950

Solyc07g054950


Description : cyclinD6_1


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g054950
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
At4g37630 No alias Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2] 0.03 Orthogroups_2024-Update
Bradi4g32556 No alias CYCLIN D4;1 0.02 Orthogroups_2024-Update
Brara.B01898.1 No alias regulatory protein *(CYCD) of cell cycle 0.05 Orthogroups_2024-Update
Brara.I03322.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
GRMZM2G140633 No alias CYCLIN D4;1 0.03 Orthogroups_2024-Update
Glyma.14G180300 No alias CYCLIN D4;1 0.03 Orthogroups_2024-Update
Kfl00038_0280 kfl00038_0280_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_94639g0010 No alias (at1g70210 : 160.0) Encodes a D-type cyclin that... 0.02 Orthogroups_2024-Update
PSME_00001479-RA No alias (at4g34160 : 239.0) encodes a cyclin D-type protein... 0.03 Orthogroups_2024-Update
PSME_00003592-RA No alias (at4g34160 : 230.0) encodes a cyclin D-type protein... 0.03 Orthogroups_2024-Update
PSME_00043848-RA No alias (at1g70210 : 237.0) Encodes a D-type cyclin that... 0.02 Orthogroups_2024-Update
Potri.006G088300 No alias CYCLIN D7;1 0.04 Orthogroups_2024-Update
Solyc04g078470 No alias D-type cyclin-3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 150 250
IPR006671 Cyclin_N 26 147
No external refs found!