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  5. Cre01.g016050

Cre01.g016050


Description : Pre-mRNA-processing-splicing factor


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre01.g016050
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
173603 No alias Pre-mRNA-processing-splicing factor 0.02 Orthogroups_2024-Update
A4A49_30390 No alias pre-mrna-processing-splicing factor 8a 0.01 Orthogroups_2024-Update
Brara.A01074.1 No alias protein factor *(PRPF8/SUS2) of MAC... 0.01 Orthogroups_2024-Update
Brara.D01879.1 No alias protein factor *(PRPF8/SUS2) of MAC... 0.01 Orthogroups_2024-Update
GRMZM2G099355 No alias Pre-mRNA-processing-splicing factor 0.02 Orthogroups_2024-Update
Glyma.13G366100 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
Glyma.15G007100 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
Kfl00461_0140 kfl00461_0140_v1.1 (at1g80070 : 4182.0) a genetic locus involved in... 0.03 Orthogroups_2024-Update
Mp1g12380.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 Orthogroups_2024-Update
PSME_00012209-RA No alias (at1g80070 : 3342.0) a genetic locus involved in... 0.02 Orthogroups_2024-Update
Seita.4G060000.1 No alias protein factor *(PRPF8/SUS2) of MAC... 0.03 Orthogroups_2024-Update
Sobic.010G053600.3 No alias protein factor *(PRPF8/SUS2) of MAC... 0.01 Orthogroups_2024-Update
evm.model.tig00000093.137 No alias (at1g80070 : 3340.0) a genetic locus involved in... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0017070 U6 snRNA binding IEA InterProScan predictions
MF GO:0030623 U5 snRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR021983 PRP8_domainIV 1824 2053
IPR019580 Prp8_U6-snRNA-bd 1507 1664
IPR012592 PROCN 460 865
IPR012591 PRO8NT 117 268
IPR019582 RRM_spliceosomal_PrP8 1050 1140
IPR019581 Prp8_U5-snRNA-bd 1274 1407
IPR012984 PROCT 2276 2394
IPR000555 JAMM/MPN+_dom 2164 2260
No external refs found!