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  5. MA_18086g0010

MA_18086g0010


Description : (at1g76900 : 162.0) Member of TLP family; tubby like protein 1 (TLP1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 10 (TAIR:AT1G25280.1); Has 1520 Blast hits to 1117 proteins in 153 species: Archae - 0; Bacteria - 107; Metazoa - 432; Fungi - 112; Plants - 488; Viruses - 57; Other Eukaryotes - 324 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description)


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_18086g0010
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Bradi3g13080 No alias tubby like protein 10 0.02 Orthogroups_2024-Update
PSME_00035615-RA No alias (at2g47900 : 306.0) Member of TLP family; tubby like... 0.04 Orthogroups_2024-Update
Potri.002G034600 No alias tubby like protein 6 0.02 Orthogroups_2024-Update
Pp1s222_14V6 No alias No description available 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 93 141
No external refs found!