Solyc10g084310

Description : Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO)

Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc10g084310
Cluster	HCCA clusters: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
145246	No alias	Ribosomal protein S12/S23 family protein	0.02	Orthogroups_2024-Update
A4A49_59751	No alias	40s ribosomal protein s23	0.03	Orthogroups_2024-Update
Bradi2g54210	No alias	Ribosomal protein S12/S23 family protein	0.04	Orthogroups_2024-Update
Brara.C00091.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre12.g504200	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
Glyma.13G137100	No alias	Ribosomal protein S12/S23 family protein	0.02	Orthogroups_2024-Update
Glyma.19G178800	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G112390.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
LOC_Os03g60400	No alias	40S ribosomal protein S23, putative, expressed	0.03	Orthogroups_2024-Update
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.02	Orthogroups_2024-Update
PSME_00017761-RA	No alias	(p46297\|rs23_fraan : 278.0) 40S ribosomal protein S23...	0.03	Orthogroups_2024-Update
Potri.006G131500	No alias	Ribosomal protein S12/S23 family protein	0.04	Orthogroups_2024-Update
Pp1s135_33V6	No alias	40s ribosomal protein s23	0.02	Orthogroups_2024-Update
Pp1s287_20V6	No alias	40s ribosomal protein s23	0.04	Orthogroups_2024-Update
Pp1s61_268V6	No alias	40s ribosomal protein s23	0.04	Orthogroups_2024-Update
Sobic.003G346600.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Sobic.009G166500.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sopen09g002250	No alias	Ribosomal protein S12/S23	0.02	Orthogroups_2024-Update
Sopen10g035390	No alias	Ribosomal protein S12/S23	0.04	Orthogroups_2024-Update
evm.model.contig_4434.4	No alias	(p46297\|rs23_fraan : 218.0) 40S ribosomal protein S23...	0.03	Orthogroups_2024-Update
evm.model.tig00001264.27	No alias	(at5g02960 : 160.0) Ribosomal protein S12/S23 family...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0003713	transcription coactivator activity	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005787	signal peptidase complex	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006465	signal peptide processing	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
MF	GO:0035091	phosphatidylinositol binding	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	9	141

External Links

No external refs found!

Solyc10g084310

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation