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  5. Solyc11g006060

Solyc11g006060


Description : Rubisco accumulation factor 1.1, chloroplastic (AHRD V3.3 *** RAF1_ARATH)


Gene families : OG_42_0006514 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g006060
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
A4A49_27143 No alias rubisco accumulation factor 2, chloroplastic 0.03 Orthogroups_2024-Update
At3g04550 No alias Rubisco accumulation factor 1.2, chloroplastic... 0.03 Orthogroups_2024-Update
GRMZM2G457621 No alias Function unknown 0.02 Orthogroups_2024-Update
Seita.9G237700.1 No alias assembly factor involved in RuBisCo assembly *(RAF1) 0.03 Orthogroups_2024-Update
Sopen11g002000 No alias hypothetical protein 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!