Pp1s109_251V6

Description : u-box domain-containing protein

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s109_251V6
Cluster	HCCA clusters: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
A4A49_05178	No alias	e3 ubiquitin-protein ligase pub24	0.03	Orthogroups_2024-Update
At3g02840	No alias	ARM repeat superfamily protein...	0.03	Orthogroups_2024-Update
Brara.E00873.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Glyma.12G189000	No alias	plant U-box 23	0.04	Orthogroups_2024-Update
HORVU0Hr1G003810.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
HORVU6Hr1G089560.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
MA_200041g0010	No alias	(at3g19380 : 209.0) plant U-box 25 (PUB25); FUNCTIONS...	0.02	Orthogroups_2024-Update
MA_8030489g0010	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
MA_84154g0010	No alias	(at3g19380 : 196.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00026834-RA	No alias	(at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00054803-RA	No alias	(at3g52450 : 283.0) Encodes a cytoplasmically localized...	0.02	Orthogroups_2024-Update
PSME_00056652-RA	No alias	(at2g35930 : 195.0) Encodes a cytoplasmically localized...	0.04	Orthogroups_2024-Update
PSME_00056761-RA	No alias	(at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS...	0.04	Orthogroups_2024-Update
Potri.009G100200	No alias	plant U-box 26	0.04	Orthogroups_2024-Update
Seita.1G186200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Seita.4G109000.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Seita.7G217500.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.006G075400.2	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Solyc04g071030	No alias	U-box domain-containing family protein (AHRD V3.3 ***...	0.04	Orthogroups_2024-Update
Sopen11g001970	No alias	U-box domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	79

External Links

No external refs found!

Pp1s109_251V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation