1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s242_95V6

Pp1s242_95V6


Description : ribosomal protein l12


Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s242_95V6
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
A4A49_11444 No alias 50s ribosomal protein l12, chloroplastic 0.09 Orthogroups_2024-Update
Bradi2g45730 No alias ribosomal protein L12-C 0.06 Orthogroups_2024-Update
Brara.B03314.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Brara.F03180.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Brara.F03181.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Brara.I00300.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Cre13.g581650 No alias ribosomal protein L12-A 0.12 Orthogroups_2024-Update
GRMZM2G360021 No alias ribosomal protein L12-C 0.06 Orthogroups_2024-Update
Glyma.11G099300 No alias ribosomal protein L12-A 0.02 Orthogroups_2024-Update
HORVU1Hr1G089760.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
HORVU3Hr1G059810.2 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Kfl00181_0250 kfl00181_0250_v1.1 (q9tl30|rk12_nepol : 115.0) Chloroplast 50S ribosomal... 0.08 Orthogroups_2024-Update
LOC_Os05g49320 No alias ribosomal protein L7/L12 C-terminal domain containing... 0.04 Orthogroups_2024-Update
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.04 Orthogroups_2024-Update
Potri.001G346100 No alias ribosomal protein L12-A 0.09 Orthogroups_2024-Update
Pp1s60_169V6 No alias ribosomal protein l12 0.03 Orthogroups_2024-Update
Seita.3G141800.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Seita.5G253700.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Sobic.003G246400.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.18 Orthogroups_2024-Update
Sopen02g031490 No alias Ribosomal protein L7/L12 C-terminal domain 0.07 Orthogroups_2024-Update
Sopen02g031500 No alias Ribosomal protein L7/L12 C-terminal domain 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 122 189
IPR008932 Ribosomal_L7/L12_oligo 64 111
No external refs found!