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  5. Pp1s59_317V6

Pp1s59_317V6


Description : rna helicase


Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s59_317V6
Cluster HCCA clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
230685 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
At2g40700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
At3g18600 No alias DEAD-box ATP-dependent RNA helicase 51... 0.02 Orthogroups_2024-Update
At5g54910 No alias DEAD-box ATP-dependent RNA helicase 32... 0.03 Orthogroups_2024-Update
Bradi4g41160 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
Brara.E02336.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.07 Orthogroups_2024-Update
Brara.F02458.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.02 Orthogroups_2024-Update
Brara.J00951.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre03.g156150 No alias DEA(D/H)-box RNA helicase family protein 0.07 Orthogroups_2024-Update
Cre07.g314900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Orthogroups_2024-Update
GRMZM5G897976 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Glyma.04G145400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Orthogroups_2024-Update
Glyma.06G209400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.17G123300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU1Hr1G004510.5 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g58810 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G250700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Potri.009G045300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
Seita.2G332500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G051500.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Sobic.002G318800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc03g114370 No alias RNA helicase DEAD13 0.03 Orthogroups_2024-Update
Solyc07g064520 No alias RNA helicase DEAD24 0.03 Orthogroups_2024-Update
Sopen03g033470 No alias DEAD/DEAH box helicase 0.06 Orthogroups_2024-Update
evm.model.tig00000441.11 No alias (at3g18600 : 300.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00000441.12 No alias (at5g65900 : 171.0) DEA(D/H)-box RNA helicase family... 0.02 Orthogroups_2024-Update
evm.model.tig00000615.43 No alias (at2g40700 : 189.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00020604.24 No alias (at5g54910 : 437.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 152 323
IPR025313 DUF4217 510 570
IPR001650 Helicase_C 365 468
No external refs found!