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  5. Solyc12g014170

Solyc12g014170


Description : Transcription factor GTE4 (AHRD V3.3 *** W9QS80_9ROSA)


Gene families : OG_42_0000275 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g014170
Cluster HCCA clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
At1g17790 No alias Transcription factor GTE5, chloroplastic... 0.03 Orthogroups_2024-Update
Brara.B02060.1 No alias transcriptional co-activator *(BET/GTE) 0.02 Orthogroups_2024-Update
GRMZM2G167718 No alias global transcription factor group E4 0.03 Orthogroups_2024-Update
Potri.011G077100 No alias bromodomain and extraterminal domain protein 9 0.02 Orthogroups_2024-Update
Potri.012G094300 No alias nuclear protein X1 0.03 Orthogroups_2024-Update
Seita.6G078100.1 No alias transcriptional co-activator *(BET/GTE) 0.02 Orthogroups_2024-Update
Sopen01g048660 No alias Bromodomain 0.03 Orthogroups_2024-Update
Sopen12g005960 No alias Bromodomain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027353 NET_dom 554 615
IPR001487 Bromodomain 367 447
No external refs found!