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  5. evm.model.contig_2165.10

evm.model.contig_2165.10


Description : (at2g29960 : 113.0) encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.; cyclophilin 5 (CYP5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cytosol, Golgi stack, endoplasmic reticulum, membrane fraction, multivesicular body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 7 (TAIR:AT5G58710.1); Has 15750 Blast hits to 15712 proteins in 2648 species: Archae - 109; Bacteria - 6497; Metazoa - 2918; Fungi - 1356; Plants - 1258; Viruses - 4; Other Eukaryotes - 3608 (source: NCBI BLink). & (q41651|cypb_vicfa : 87.8) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (CYP B) - Vicia faba (Broad bean) & (reliability: 226.0) & (original description: no original description)


Gene families : OG_42_0144158 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2165.10
Cluster HCCA clusters: Cluster_27


Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEA InterProScan predictions
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002130 Cyclophilin-type_PPIase_dom 92 254
No external refs found!