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evm.model.contig_2174.1


Description : (p41918|rana1_tobac : 303.0) GTP-binding nuclear protein Ran-A1 - Nicotiana tabacum (Common tobacco) & (at5g20010 : 300.0) A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.; RAS-related nuclear protein-1 (RAN-1); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, protein import into nucleus; LOCATED IN: apoplast, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN GTPase 3 (TAIR:AT5G55190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 600.0) & (original description: no original description)


Gene families : OG_42_0001632 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2174.1
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Bradi2g15730 No alias RAN GTPase 3 0.02 Orthogroups_2024-Update
Brara.B00859.1 No alias GTPase *(Ran) 0.04 Orthogroups_2024-Update
GRMZM2G354604 No alias RAN GTPase 3 0.02 Orthogroups_2024-Update
MA_20427g0010 No alias (p41918|rana1_tobac : 390.0) GTP-binding nuclear protein... 0.02 Orthogroups_2024-Update
MA_28412g0010 No alias (p41918|rana1_tobac : 350.0) GTP-binding nuclear protein... 0.02 Orthogroups_2024-Update
Mp2g19920.1 No alias Ran GTPase 0.02 Orthogroups_2024-Update
Pp1s10_203V6 No alias gtp-binding protein 0.02 Orthogroups_2024-Update
Pp1s29_119V6 No alias ran-family small GTPase 0.02 Orthogroups_2024-Update
Sobic.003G238000.1 No alias GTPase *(Ran) 0.02 Orthogroups_2024-Update
Sobic.009G240900.1 No alias GTPase *(Ran) 0.03 Orthogroups_2024-Update
Sobic.010G182700.1 No alias GTPase *(Ran) 0.02 Orthogroups_2024-Update
Solyc01g104680 No alias Ran protein/TC4 protein ran2a 0.02 Orthogroups_2024-Update
Sopen05g018400 No alias Ras family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0006817 phosphate ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
CC GO:0019008 molybdopterin synthase complex IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0032006 regulation of TOR signaling IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 9 165
No external refs found!