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- Porphyridium purpureum
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- evm.model.contig_671.1
evm.model.contig_671.1
Description : (at1g06220 : 482.0) Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.; MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: regulation of embryo sac egg cell differentiation, embryo development ending in seed dormancy; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT5G25230.1); Has 61019 Blast hits to 57504 proteins in 4658 species: Archae - 1314; Bacteria - 38464; Metazoa - 2393; Fungi - 1714; Plants - 1333; Viruses - 1; Other Eukaryotes - 15800 (source: NCBI BLink). & (o23755|ef2_betvu : 286.0) Elongation factor 2 (EF-2) - Beta vulgaris (Sugar beet) & (reliability: 964.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Porphyridium release: evm.model.contig_671.1 | |
Cluster | HCCA clusters: Cluster_46 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
Mp8g11140.1 | No alias | protein factor SNU114/U5-116kDa of U5 small nuclear... | 0.01 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | None | Extended |
MF | GO:0001882 | nucleoside binding | None | Extended |
MF | GO:0001883 | purine nucleoside binding | None | Extended |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0003924 | GTPase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005525 | GTP binding | IEA | InterProScan predictions |
MF | GO:0016462 | pyrophosphatase activity | None | Extended |
MF | GO:0016787 | hydrolase activity | None | Extended |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | None | Extended |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
MF | GO:0017111 | nucleoside-triphosphatase activity | None | Extended |
MF | GO:0019001 | guanyl nucleotide binding | None | Extended |
MF | GO:0032549 | ribonucleoside binding | None | Extended |
MF | GO:0032550 | purine ribonucleoside binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032561 | guanyl ribonucleotide binding | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
Type | GO Term | Name | Evidence | Source |
MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
CC | GO:0005787 | signal peptidase complex | IEP | Predicted GO |
BP | GO:0006166 | purine ribonucleoside salvage | IEP | Predicted GO |
BP | GO:0006190 | inosine salvage | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006465 | signal peptide processing | IEP | Predicted GO |
MF | GO:0008252 | nucleotidase activity | IEP | Predicted GO |
MF | GO:0008253 | 5'-nucleotidase activity | IEP | Predicted GO |
BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009163 | nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0016485 | protein processing | IEP | Predicted GO |
MF | GO:0016791 | phosphatase activity | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | Predicted GO |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | Predicted GO |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Predicted GO |
BP | GO:0043094 | cellular metabolic compound salvage | IEP | Predicted GO |
BP | GO:0043101 | purine-containing compound salvage | IEP | Predicted GO |
BP | GO:0043174 | nucleoside salvage | IEP | Predicted GO |
CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
BP | GO:0046102 | inosine metabolic process | IEP | Predicted GO |
BP | GO:0046103 | inosine biosynthetic process | IEP | Predicted GO |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | Predicted GO |
MF | GO:0050483 | IMP 5'-nucleotidase activity | IEP | Predicted GO |
BP | GO:0051604 | protein maturation | IEP | Predicted GO |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Predicted GO |
CC | GO:1905368 | peptidase complex | IEP | Predicted GO |