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  5. PSME_00025508-RA

PSME_00025508-RA


Description : (q9ayp4|rs10_orysa : 181.0) 40S ribosomal protein S10 - Oryza sativa (Rice) & (at4g25740 : 174.0) RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)


Gene families : OG_42_0001576 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001576_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025508-RA
Cluster HCCA clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
37555 No alias RNA binding Plectin/S10 domain-containing protein 0.06 Orthogroups_2024-Update
A4A49_36949 No alias 40s ribosomal protein s10-3 0.08 Orthogroups_2024-Update
A4A49_64300 No alias 40s ribosomal protein s10-3 0.08 Orthogroups_2024-Update
At5g52650 No alias 40S ribosomal protein S10-3... 0.03 Orthogroups_2024-Update
Bradi2g61560 No alias RNA binding Plectin/S10 domain-containing protein 0.06 Orthogroups_2024-Update
Bradi3g43060 No alias RNA binding Plectin/S10 domain-containing protein 0.08 Orthogroups_2024-Update
Brara.A01568.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Brara.C01425.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.D01152.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.G01517.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Brara.H01564.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Brara.K00178.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Cre09.g411100 No alias RNA binding Plectin/S10 domain-containing protein 0.08 Orthogroups_2024-Update
GRMZM2G171484 No alias RNA binding Plectin/S10 domain-containing protein 0.11 Orthogroups_2024-Update
Glyma.01G222100 No alias RNA binding Plectin/S10 domain-containing protein 0.1 Orthogroups_2024-Update
Glyma.08G017500 No alias RNA binding Plectin/S10 domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.11G021700 No alias RNA binding Plectin/S10 domain-containing protein 0.11 Orthogroups_2024-Update
HORVU0Hr1G004700.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
HORVU3Hr1G111760.2 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
LOC_Os04g35090 No alias 40S ribosomal protein S10, putative, expressed 0.03 Orthogroups_2024-Update
MA_314020g0010 No alias (q9ayp4|rs10_orysa : 182.0) 40S ribosomal protein S10 -... 0.06 Orthogroups_2024-Update
Potri.004G073500 No alias RNA binding Plectin/S10 domain-containing protein 0.09 Orthogroups_2024-Update
Potri.013G027900 No alias RNA binding Plectin/S10 domain-containing protein 0.11 Orthogroups_2024-Update
Pp1s18_236V6 No alias 40s ribosomal protein s10 0.04 Orthogroups_2024-Update
Pp1s255_28V6 No alias 40s ribosomal protein s10 0.07 Orthogroups_2024-Update
Pp1s281_7V6 No alias 40s ribosomal protein s10 0.08 Orthogroups_2024-Update
Pp1s427_37V6 No alias 40s ribosomal protein s10 0.07 Orthogroups_2024-Update
Pp1s43_46V6 No alias 40s ribosomal protein s10 0.15 Orthogroups_2024-Update
Pp1s95_87V6 No alias 40s ribosomal protein s10 0.01 Orthogroups_2024-Update
Seita.5G462400.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G099000.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Sobic.003G436700.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Sobic.006G081100.1 No alias component *(eS10) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Solyc01g099670 No alias meloidogyne-induced giant cell protein db212 0.07 Orthogroups_2024-Update
Solyc12g096540 No alias 40S ribosomal protein S10-like (AHRD V3.3 *** Q2XPV4_SOLTU) 0.04 Orthogroups_2024-Update
Sopen01g043180 No alias Plectin/S10 domain 0.12 Orthogroups_2024-Update
Sopen12g032370 No alias Plectin/S10 domain 0.07 Orthogroups_2024-Update
evm.model.contig_636.5 No alias (q9ayp4|rs10_orysa : 95.9) 40S ribosomal protein S10 -... 0.16 Orthogroups_2024-Update
evm.model.tig00001164.5 No alias (original description: no original description) 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004359 glutaminase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 5 96
No external refs found!