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  5. GRMZM2G122811

GRMZM2G122811


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein


Gene families : OG_42_0004682 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004682_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G122811
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
98161 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Orthogroups_2024-Update
A4A49_21862 No alias haca ribonucleoprotein complex subunit 2-like protein 0.03 Orthogroups_2024-Update
At5g08180 No alias H/ACA ribonucleoprotein complex subunit 2-like protein... 0.04 Orthogroups_2024-Update
Bradi3g56240 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
Brara.B00272.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.06 Orthogroups_2024-Update
Brara.C00334.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 Orthogroups_2024-Update
Brara.J02446.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.04 Orthogroups_2024-Update
Cre16.g690500 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
Glyma.17G083200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Glyma.17G083500 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
HORVU6Hr1G072650.3 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.04 Orthogroups_2024-Update
LOC_Os06g16290 No alias ribosomal protein L7Ae, putative, expressed 0.04 Orthogroups_2024-Update
Seita.1G305100.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 Orthogroups_2024-Update
Seita.4G122000.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.04 Orthogroups_2024-Update
Sobic.004G252100.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 Orthogroups_2024-Update
Sobic.010G115200.1 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 Orthogroups_2024-Update
Solyc12g038980 No alias H/ACA ribonucleoprotein complex subunit 2-like protein... 0.04 Orthogroups_2024-Update
Sopen12g019210 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.03 Orthogroups_2024-Update
evm.model.contig_4403.13 No alias (at5g08180 : 94.4) Ribosomal protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 32 117
No external refs found!