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  5. HORVU7Hr1G115460.4

HORVU7Hr1G115460.4


Description : SSU processome assembly factor *(UTP21)


Gene families : OG_42_0007155 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007155_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G115460.4
Cluster HCAA Clusters: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
At4g04940 No alias Putative WD-repeat membrane protein... 0.04 Orthogroups_2024-Update
Bradi1g30580 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Brara.C02742.1 No alias SSU processome assembly factor *(UTP21) 0.02 Orthogroups_2024-Update
Cre10.g466250 No alias transducin family protein / WD-40 repeat family protein 0.01 Orthogroups_2024-Update
GRMZM2G087712 No alias transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
LOC_Os06g43690 No alias WD repeat-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp3g13780.1 No alias SSU processome assembly factor (UTP21) 0.03 Orthogroups_2024-Update
Potri.006G078900 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
Potri.018G148132 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Seita.4G201000.1 No alias SSU processome assembly factor *(UTP21) 0.03 Orthogroups_2024-Update
Sobic.010G205900.1 No alias SSU processome assembly factor *(UTP21) 0.04 Orthogroups_2024-Update
Solyc01g087670 No alias Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072UCU5_MEDTR) 0.04 Orthogroups_2024-Update
Sopen01g034630 No alias Utp21 specific WD40 associated putative domain 0.03 Orthogroups_2024-Update
evm.model.contig_493.12 No alias (at4g04940 : 260.0) transducin family protein / WD-40... 0.02 Orthogroups_2024-Update
evm.model.tig00021348.51 No alias (at4g04940 : 484.0) transducin family protein / WD-40... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
BP GO:0006364 rRNA processing IEA 16Dec
CC GO:0032040 small-subunit processome IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 191 277
IPR007319 SSU_processome_Utp21 688 901
IPR001680 WD40_repeat 309 342
IPR001680 WD40_repeat 550 586
No external refs found!