Sobic.003G379800.1

Description : E3 ubiquitin ligase

Gene families : OG_42_0002125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002125_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.003G379800.1
Cluster	HCAA Clusters: Cluster_182

Target	Alias	Description	ECC score	Gene Family Method
At5g67340	No alias	U-box domain-containing protein 2...	0.03	Orthogroups_2024-Update
Glyma.11G161500	No alias	RING/U-box superfamily protein with ARM repeat domain	0.03	Orthogroups_2024-Update
Glyma.18G055200	No alias	RING/U-box superfamily protein with ARM repeat domain	0.04	Orthogroups_2024-Update
LOC_Os01g66130	No alias	armadillo/beta-catenin repeat family protein, putative, expressed	0.02	Orthogroups_2024-Update
Seita.6G010800.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	16Dec
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0004609	phosphatidylserine decarboxylase activity	IEP	Predicted GO
MF	GO:0004806	triglyceride lipase activity	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006914	autophagy	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	230	299
IPR000225	Armadillo	552	589
IPR000225	Armadillo	632	671

External Links

No external refs found!