Coexpression cluster: Cluster_18 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006270 DNA replication initiation 3.55% (7/197) 6.09 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 12.69% (25/197) 1.72 0.0 2.6e-05
GO:1901360 organic cyclic compound metabolic process 12.69% (25/197) 1.69 0.0 2.8e-05
GO:0046483 heterocycle metabolic process 12.69% (25/197) 1.73 0.0 3.7e-05
GO:0006139 nucleobase-containing compound metabolic process 11.68% (23/197) 1.71 1e-06 5.5e-05
GO:0043227 membrane-bounded organelle 5.08% (10/197) 2.56 8e-06 0.000488
GO:0043231 intracellular membrane-bounded organelle 5.08% (10/197) 2.56 8e-06 0.000488
GO:0034641 cellular nitrogen compound metabolic process 12.69% (25/197) 1.43 6e-06 0.000517
GO:0005634 nucleus 4.57% (9/197) 2.69 1.1e-05 0.000579
GO:0090304 nucleic acid metabolic process 9.14% (18/197) 1.62 2.5e-05 0.001177
GO:0006807 nitrogen compound metabolic process 17.77% (35/197) 1.04 3.1e-05 0.00135
GO:0003677 DNA binding 7.11% (14/197) 1.81 5.2e-05 0.001388
GO:0016874 ligase activity 3.55% (7/197) 2.94 3.5e-05 0.001411
GO:0005524 ATP binding 11.68% (23/197) 1.32 5.1e-05 0.001439
GO:0097159 organic cyclic compound binding 19.8% (39/197) 0.94 5e-05 0.001509
GO:1901363 heterocyclic compound binding 19.8% (39/197) 0.94 5e-05 0.001509
GO:0030554 adenyl nucleotide binding 11.68% (23/197) 1.3 6.4e-05 0.00153
GO:0032559 adenyl ribonucleotide binding 11.68% (23/197) 1.3 6.2e-05 0.001552
GO:0006259 DNA metabolic process 6.09% (12/197) 2.01 4.7e-05 0.001602
GO:0008144 drug binding 12.18% (24/197) 1.29 4.6e-05 0.001683
GO:0036094 small molecule binding 13.71% (27/197) 1.11 0.000127 0.002892
GO:0044281 small molecule metabolic process 5.58% (11/197) 1.94 0.000154 0.003343
GO:0009987 cellular process 20.3% (40/197) 0.84 0.00017 0.003543
GO:0003674 molecular_function 42.13% (83/197) 0.49 0.000207 0.004124
GO:0003676 nucleic acid binding 11.17% (22/197) 1.21 0.000223 0.004266
GO:0035639 purine ribonucleoside triphosphate binding 11.68% (23/197) 1.15 0.000294 0.005219
GO:0008152 metabolic process 23.35% (46/197) 0.73 0.000287 0.005295
GO:0044427 chromosomal part 2.54% (5/197) 3.02 0.000368 0.005503
GO:0000166 nucleotide binding 12.69% (25/197) 1.07 0.000348 0.00555
GO:1901265 nucleoside phosphate binding 12.69% (25/197) 1.07 0.000348 0.00555
GO:0017076 purine nucleotide binding 11.68% (23/197) 1.13 0.000365 0.005638
GO:0043168 anion binding 12.69% (25/197) 1.06 0.000401 0.005643
GO:0071704 organic substance metabolic process 18.78% (37/197) 0.83 0.000391 0.005677
GO:0032553 ribonucleotide binding 11.68% (23/197) 1.11 0.000418 0.00572
GO:0032555 purine ribonucleotide binding 11.68% (23/197) 1.13 0.000343 0.005873
GO:0005488 binding 27.41% (54/197) 0.63 0.000456 0.006071
GO:0097367 carbohydrate derivative binding 11.68% (23/197) 1.1 0.000471 0.006093
GO:0051726 regulation of cell cycle 1.52% (3/197) 4.23 0.000484 0.0061
GO:0044283 small molecule biosynthetic process 3.05% (6/197) 2.55 0.000572 0.007024
GO:0044238 primary metabolic process 17.77% (35/197) 0.82 0.000654 0.007826
GO:0008150 biological_process 29.44% (58/197) 0.58 0.000691 0.008068
GO:0019752 carboxylic acid metabolic process 3.55% (7/197) 2.14 0.00108 0.012321
GO:0044237 cellular metabolic process 16.24% (32/197) 0.82 0.00113 0.012589
GO:0019438 aromatic compound biosynthetic process 4.06% (8/197) 1.95 0.001167 0.012708
GO:0043436 oxoacid metabolic process 3.55% (7/197) 2.1 0.001274 0.013562
GO:0006082 organic acid metabolic process 3.55% (7/197) 2.09 0.001326 0.013813
GO:0018130 heterocycle biosynthetic process 4.06% (8/197) 1.9 0.001436 0.014631
GO:0043170 macromolecule metabolic process 13.71% (27/197) 0.88 0.001471 0.01468
GO:0006732 coenzyme metabolic process 2.03% (4/197) 3.0 0.001556 0.014909
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.03% (4/197) 3.0 0.001556 0.014909
GO:0009117 nucleotide metabolic process 2.54% (5/197) 2.53 0.001755 0.016484
GO:0006753 nucleoside phosphate metabolic process 2.54% (5/197) 2.49 0.001969 0.01814
GO:1901362 organic cyclic compound biosynthetic process 4.06% (8/197) 1.81 0.002118 0.019143
GO:0046496 nicotinamide nucleotide metabolic process 1.52% (3/197) 3.46 0.002474 0.02155
GO:0019362 pyridine nucleotide metabolic process 1.52% (3/197) 3.46 0.002474 0.02155
GO:0006733 oxidoreduction coenzyme metabolic process 1.52% (3/197) 3.4 0.002788 0.023433
GO:0072524 pyridine-containing compound metabolic process 1.52% (3/197) 3.4 0.002788 0.023433
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 2.03% (4/197) 2.73 0.0031 0.02475
GO:0043226 organelle 5.08% (10/197) 1.49 0.003154 0.024769
GO:0043229 intracellular organelle 5.08% (10/197) 1.5 0.003083 0.02503
GO:0009058 biosynthetic process 7.61% (15/197) 1.16 0.003043 0.025128
GO:0140101 catalytic activity, acting on a tRNA 2.03% (4/197) 2.7 0.003319 0.025641
GO:0034404 nucleobase-containing small molecule biosynthetic process 1.52% (3/197) 3.29 0.003487 0.026101
GO:0072528 pyrimidine-containing compound biosynthetic process 1.02% (2/197) 4.46 0.00346 0.026305
GO:0055086 nucleobase-containing small molecule metabolic process 2.54% (5/197) 2.29 0.003674 0.026666
GO:0003824 catalytic activity 23.35% (46/197) 0.56 0.003641 0.02683
GO:0019693 ribose phosphate metabolic process 2.03% (4/197) 2.65 0.003787 0.027075
GO:0072527 pyrimidine-containing compound metabolic process 1.02% (2/197) 4.29 0.004415 0.031099
GO:0009165 nucleotide biosynthetic process 2.03% (4/197) 2.55 0.004854 0.033215
GO:1901293 nucleoside phosphate biosynthetic process 2.03% (4/197) 2.55 0.004854 0.033215
GO:0044424 intracellular part 8.12% (16/197) 1.02 0.00585 0.038388
GO:0046394 carboxylic acid biosynthetic process 2.03% (4/197) 2.48 0.005775 0.038419
GO:0016053 organic acid biosynthetic process 2.03% (4/197) 2.48 0.005775 0.038419
GO:0034654 nucleobase-containing compound biosynthetic process 3.05% (6/197) 1.87 0.006181 0.040011
GO:0006418 tRNA aminoacylation for protein translation 1.52% (3/197) 2.95 0.00673 0.041331
GO:0050790 regulation of catalytic activity 1.02% (2/197) 4.0 0.006645 0.041334
GO:0065009 regulation of molecular function 1.02% (2/197) 4.0 0.006645 0.041334
GO:0048523 negative regulation of cellular process 1.02% (2/197) 4.0 0.006645 0.041334
GO:1901564 organonitrogen compound metabolic process 10.15% (20/197) 0.85 0.00789 0.047842
GO:0006177 GMP biosynthetic process 0.51% (1/197) 6.46 0.011399 0.048317
GO:0006098 pentose-phosphate shunt 0.51% (1/197) 6.46 0.011399 0.048317
GO:0046653 tetrahydrofolate metabolic process 0.51% (1/197) 6.46 0.011399 0.048317
GO:0042555 MCM complex 0.51% (1/197) 6.46 0.011399 0.048317
GO:0051095 regulation of helicase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0051097 negative regulation of helicase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:1905462 regulation of DNA duplex unwinding 0.51% (1/197) 6.46 0.011399 0.048317
GO:1905463 negative regulation of DNA duplex unwinding 0.51% (1/197) 6.46 0.011399 0.048317
GO:1905774 regulation of DNA helicase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:1905775 negative regulation of DNA helicase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0004820 glycine-tRNA ligase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0006426 glycyl-tRNA aminoacylation 0.51% (1/197) 6.46 0.011399 0.048317
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0003855 3-dehydroquinate dehydratase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0046654 tetrahydrofolate biosynthetic process 0.51% (1/197) 6.46 0.011399 0.048317
GO:0003883 CTP synthase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0004146 dihydrofolate reductase activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.51% (1/197) 6.46 0.011399 0.048317
GO:0051156 glucose 6-phosphate metabolic process 0.51% (1/197) 6.46 0.011399 0.048317
GO:1901070 guanosine-containing compound biosynthetic process 0.51% (1/197) 6.46 0.011399 0.048317
GO:0046037 GMP metabolic process 0.51% (1/197) 6.46 0.011399 0.048317
GO:0043038 amino acid activation 1.52% (3/197) 2.83 0.008524 0.048607
GO:0043039 tRNA aminoacylation 1.52% (3/197) 2.83 0.008524 0.048607
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.52% (3/197) 2.83 0.008524 0.048607
GO:0004812 aminoacyl-tRNA ligase activity 1.52% (3/197) 2.83 0.008524 0.048607
GO:0046390 ribose phosphate biosynthetic process 1.52% (3/197) 2.65 0.012082 0.048635
GO:0009126 purine nucleoside monophosphate metabolic process 1.52% (3/197) 2.65 0.012082 0.048635
GO:0009152 purine ribonucleotide biosynthetic process 1.52% (3/197) 2.65 0.012082 0.048635
GO:0009161 ribonucleoside monophosphate metabolic process 1.52% (3/197) 2.65 0.012082 0.048635
GO:0009260 ribonucleotide biosynthetic process 1.52% (3/197) 2.65 0.012082 0.048635
GO:0009167 purine ribonucleoside monophosphate metabolic process 1.52% (3/197) 2.65 0.012082 0.048635
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_34 0.049 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_129 0.023 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_11 0.031 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_57 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_68 0.025 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_100 0.035 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_125 0.023 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_50 0.025 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_56 0.025 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_72 0.021 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_7 0.028 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_12 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_78 0.03 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_124 0.03 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_46 0.029 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_68 0.045 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_137 0.038 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_184 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_4 0.034 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_2 0.039 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_31 0.036 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_216 0.021 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_130 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_28 0.024 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_47 0.023 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_118 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_132 0.032 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_29 0.046 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_109 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_154 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_158 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_173 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_234 0.027 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_238 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_289 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_338 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_459 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_471 0.021 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_89 0.02 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_130 0.026 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_6 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_54 0.032 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_75 0.021 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_24 0.024 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_84 0.026 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_158 0.022 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0005 0.031 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0036 0.026 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0055 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_24 0.042 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_66 0.022 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_114 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_120 0.025 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_168 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_197 0.022 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.022 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_45 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_1 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_13 0.033 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_56 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_73 0.056 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_144 0.026 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_97 0.048 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_104 0.03 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_22 0.024 Orthogroups_2024-Update Compare
Sequences (197) (download table)

InterPro Domains

GO Terms

Family Terms