Coexpression cluster: Cluster_54 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 15.89% (17/107) 4.05 0.0 0.0
GO:0090304 nucleic acid metabolic process 16.82% (18/107) 3.1 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 17.76% (19/107) 2.64 0.0 0.0
GO:0003677 DNA binding 12.15% (13/107) 3.39 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 18.69% (20/107) 2.42 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 17.76% (19/107) 2.54 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 17.76% (19/107) 2.52 0.0 0.0
GO:0046483 heterocycle metabolic process 17.76% (19/107) 2.54 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 17.76% (19/107) 2.36 0.0 0.0
GO:0006270 DNA replication initiation 3.74% (4/107) 6.85 0.0 1e-06
GO:0051052 regulation of DNA metabolic process 2.8% (3/107) 7.44 0.0 7e-06
GO:0006275 regulation of DNA replication 2.8% (3/107) 7.44 0.0 7e-06
GO:0043170 macromolecule metabolic process 18.69% (20/107) 1.88 0.0 8e-06
GO:0006260 DNA replication 4.67% (5/107) 4.68 1e-06 2.6e-05
GO:0003676 nucleic acid binding 13.08% (14/107) 2.18 3e-06 4.2e-05
GO:0044237 cellular metabolic process 19.63% (21/107) 1.64 3e-06 4.4e-05
GO:0006807 nitrogen compound metabolic process 19.63% (21/107) 1.62 3e-06 5.1e-05
GO:0043229 intracellular organelle 7.48% (8/107) 3.14 4e-06 5.3e-05
GO:0043226 organelle 7.48% (8/107) 3.12 4e-06 5.3e-05
GO:0006974 cellular response to DNA damage stimulus 5.61% (6/107) 3.79 5e-06 5.6e-05
GO:0033554 cellular response to stress 5.61% (6/107) 3.79 5e-06 5.6e-05
GO:0051716 cellular response to stimulus 5.61% (6/107) 3.79 5e-06 5.6e-05
GO:0006950 response to stress 5.61% (6/107) 3.67 8e-06 8.8e-05
GO:0005488 binding 29.91% (32/107) 1.12 1.1e-05 0.000112
GO:0044238 primary metabolic process 19.63% (21/107) 1.5 1.3e-05 0.000127
GO:0005634 nucleus 4.67% (5/107) 3.94 1.9e-05 0.000174
GO:0006269 DNA replication, synthesis of RNA primer 1.87% (2/107) 7.85 1.9e-05 0.000179
GO:0071704 organic substance metabolic process 19.63% (21/107) 1.44 2.3e-05 0.000209
GO:0050896 response to stimulus 5.61% (6/107) 3.37 2.6e-05 0.000226
GO:0016779 nucleotidyltransferase activity 4.67% (5/107) 3.83 2.7e-05 0.000228
GO:0009987 cellular process 21.5% (23/107) 1.33 3.1e-05 0.000251
GO:0005694 chromosome 2.8% (3/107) 5.53 3.5e-05 0.00027
GO:0009059 macromolecule biosynthetic process 6.54% (7/107) 2.93 3.9e-05 0.000297
GO:0003896 DNA primase activity 1.87% (2/107) 7.27 5.6e-05 0.000409
GO:0006281 DNA repair 4.67% (5/107) 3.59 6.2e-05 0.000443
GO:0043227 membrane-bounded organelle 4.67% (5/107) 3.5 8.3e-05 0.00056
GO:0043231 intracellular membrane-bounded organelle 4.67% (5/107) 3.5 8.3e-05 0.00056
GO:1901363 heterocyclic compound binding 17.76% (19/107) 1.36 0.000129 0.000828
GO:0097159 organic cyclic compound binding 17.76% (19/107) 1.36 0.000129 0.000828
GO:0008152 metabolic process 20.56% (22/107) 1.21 0.000163 0.00102
GO:0044424 intracellular part 9.35% (10/107) 2.01 0.000198 0.001208
GO:0140097 catalytic activity, acting on DNA 3.74% (4/107) 3.76 0.000219 0.001303
GO:0003887 DNA-directed DNA polymerase activity 2.8% (3/107) 4.58 0.000266 0.001546
GO:0034061 DNA polymerase activity 2.8% (3/107) 4.53 0.000295 0.001674
GO:0044464 cell part 9.35% (10/107) 1.89 0.00038 0.002109
GO:0000166 nucleotide binding 12.15% (13/107) 1.49 0.000701 0.00373
GO:1901265 nucleoside phosphate binding 12.15% (13/107) 1.49 0.000701 0.00373
GO:0005524 ATP binding 10.28% (11/107) 1.64 0.000822 0.00428
GO:0030554 adenyl nucleotide binding 10.28% (11/107) 1.63 0.00089 0.004448
GO:0032559 adenyl ribonucleotide binding 10.28% (11/107) 1.63 0.000872 0.00445
GO:0008150 biological_process 25.23% (27/107) 0.89 0.000975 0.004777
GO:0036094 small molecule binding 12.15% (13/107) 1.44 0.001016 0.004887
GO:0030983 mismatched DNA binding 1.87% (2/107) 5.27 0.001193 0.005421
GO:0006298 mismatch repair 1.87% (2/107) 5.27 0.001193 0.005421
GO:0034645 cellular macromolecule biosynthetic process 4.67% (5/107) 2.65 0.00125 0.005582
GO:0008144 drug binding 10.28% (11/107) 1.57 0.001187 0.005601
GO:0043168 anion binding 11.21% (12/107) 1.39 0.002137 0.009375
GO:0044249 cellular biosynthetic process 7.48% (8/107) 1.78 0.002327 0.010031
GO:0003674 molecular_function 33.64% (36/107) 0.64 0.002676 0.010965
GO:0035639 purine ribonucleoside triphosphate binding 10.28% (11/107) 1.42 0.002673 0.011136
GO:1901576 organic substance biosynthetic process 7.48% (8/107) 1.75 0.002666 0.011296
GO:0032555 purine ribonucleotide binding 10.28% (11/107) 1.42 0.002805 0.011312
GO:0032299 ribonuclease H2 complex 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009265 2'-deoxyribonucleotide biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009394 2'-deoxyribonucleotide metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0045005 DNA-dependent DNA replication maintenance of fidelity 0.93% (1/107) 7.85 0.004332 0.01152
GO:0031144 proteasome localization 0.93% (1/107) 7.85 0.004332 0.01152
GO:0008156 negative regulation of DNA replication 0.93% (1/107) 7.85 0.004332 0.01152
GO:0019692 deoxyribose phosphate metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0034629 cellular protein-containing complex localization 0.93% (1/107) 7.85 0.004332 0.01152
GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009263 deoxyribonucleotide biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0006231 dTMP biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:2000104 negative regulation of DNA-dependent DNA replication 0.93% (1/107) 7.85 0.004332 0.01152
GO:0090329 regulation of DNA-dependent DNA replication 0.93% (1/107) 7.85 0.004332 0.01152
GO:0048478 replication fork protection 0.93% (1/107) 7.85 0.004332 0.01152
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0051053 negative regulation of DNA metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0050797 thymidylate synthase (FAD) activity 0.93% (1/107) 7.85 0.004332 0.01152
GO:0046385 deoxyribose phosphate biosynthetic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0046073 dTMP metabolic process 0.93% (1/107) 7.85 0.004332 0.01152
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 0.93% (1/107) 7.85 0.004332 0.01152
GO:0017076 purine nucleotide binding 10.28% (11/107) 1.41 0.00292 0.011587
GO:0043167 ion binding 13.08% (14/107) 1.13 0.004662 0.012269
GO:0032553 ribonucleotide binding 10.28% (11/107) 1.38 0.00339 0.013242
GO:0097367 carbohydrate derivative binding 10.28% (11/107) 1.38 0.00347 0.013345
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.87% (2/107) 4.1 0.006079 0.015832
GO:0009058 biosynthetic process 7.48% (8/107) 1.64 0.004249 0.016096
GO:0034062 5'-3' RNA polymerase activity 1.87% (2/107) 3.94 0.007471 0.018866
GO:0097747 RNA polymerase activity 1.87% (2/107) 3.94 0.007471 0.018866
GO:0051276 chromosome organization 1.87% (2/107) 3.94 0.007471 0.018866
GO:0005515 protein binding 12.15% (13/107) 1.09 0.007891 0.019726
GO:0009262 deoxyribonucleotide metabolic process 0.93% (1/107) 6.85 0.008645 0.020583
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 0.93% (1/107) 6.85 0.008645 0.020583
GO:0010498 proteasomal protein catabolic process 0.93% (1/107) 6.85 0.008645 0.020583
GO:0031503 protein-containing complex localization 0.93% (1/107) 6.85 0.008645 0.020583
GO:0044265 cellular macromolecule catabolic process 1.87% (2/107) 3.85 0.008471 0.020967
GO:0003690 double-stranded DNA binding 1.87% (2/107) 3.72 0.010076 0.023765
GO:0006310 DNA recombination 1.87% (2/107) 3.64 0.011215 0.026204
GO:0043228 non-membrane-bounded organelle 2.8% (3/107) 2.68 0.01161 0.02663
GO:0043232 intracellular non-membrane-bounded organelle 2.8% (3/107) 2.68 0.01161 0.02663
GO:0009057 macromolecule catabolic process 1.87% (2/107) 3.6 0.011805 0.026831
GO:0006221 pyrimidine nucleotide biosynthetic process 0.93% (1/107) 6.27 0.012939 0.028882
GO:0006220 pyrimidine nucleotide metabolic process 0.93% (1/107) 6.27 0.012939 0.028882
GO:0030163 protein catabolic process 0.93% (1/107) 5.85 0.017215 0.035277
GO:0051983 regulation of chromosome segregation 0.93% (1/107) 5.85 0.017215 0.035277
GO:0030071 regulation of mitotic metaphase/anaphase transition 0.93% (1/107) 5.85 0.017215 0.035277
GO:1905818 regulation of chromosome separation 0.93% (1/107) 5.85 0.017215 0.035277
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 0.93% (1/107) 5.85 0.017215 0.035277
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 0.93% (1/107) 5.85 0.017215 0.035277
GO:0033047 regulation of mitotic sister chromatid segregation 0.93% (1/107) 5.85 0.017215 0.035277
GO:0033045 regulation of sister chromatid segregation 0.93% (1/107) 5.85 0.017215 0.035277
GO:0010965 regulation of mitotic sister chromatid separation 0.93% (1/107) 5.85 0.017215 0.035277
GO:0006996 organelle organization 1.87% (2/107) 3.36 0.016302 0.036067
GO:0007088 regulation of mitotic nuclear division 0.93% (1/107) 5.53 0.021473 0.040062
GO:0007346 regulation of mitotic cell cycle 0.93% (1/107) 5.53 0.021473 0.040062
GO:1901987 regulation of cell cycle phase transition 0.93% (1/107) 5.53 0.021473 0.040062
GO:0009890 negative regulation of biosynthetic process 0.93% (1/107) 5.53 0.021473 0.040062
GO:0010558 negative regulation of macromolecule biosynthetic process 0.93% (1/107) 5.53 0.021473 0.040062
GO:0033044 regulation of chromosome organization 0.93% (1/107) 5.53 0.021473 0.040062
GO:1901990 regulation of mitotic cell cycle phase transition 0.93% (1/107) 5.53 0.021473 0.040062
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 0.93% (1/107) 5.53 0.021473 0.040062
GO:0051783 regulation of nuclear division 0.93% (1/107) 5.53 0.021473 0.040062
GO:0031327 negative regulation of cellular biosynthetic process 0.93% (1/107) 5.53 0.021473 0.040062
GO:0006401 RNA catabolic process 0.93% (1/107) 5.53 0.021473 0.040062
GO:0003910 DNA ligase (ATP) activity 0.93% (1/107) 5.53 0.021473 0.040062
GO:0051172 negative regulation of nitrogen compound metabolic process 0.93% (1/107) 5.27 0.025712 0.046581
GO:0003909 DNA ligase activity 0.93% (1/107) 5.27 0.025712 0.046581
GO:0005680 anaphase-promoting complex 0.93% (1/107) 5.27 0.025712 0.046581
GO:0000152 nuclear ubiquitin ligase complex 0.93% (1/107) 5.27 0.025712 0.046581
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_34 0.037 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_254 0.021 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_100 0.044 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_6 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_7 0.067 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_78 0.038 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_124 0.077 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_18 0.032 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_30 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_38 0.032 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_55 0.023 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_131 0.035 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_182 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_4 0.023 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_60 0.036 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_29 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_129 0.025 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_24 0.03 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_120 0.026 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_175 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_73 0.049 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_97 0.05 Orthogroups_2024-Update Compare
Sequences (107) (download table)

InterPro Domains

GO Terms

Family Terms